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Showing posts with the label Bigdata

R Foverlaps Equivalent In Python

I am trying to rewrite some R code in Python and cannot get past one particular bit of code. I'… Read more R Foverlaps Equivalent In Python

Quickly Sampling Large Number Of Rows From Large Dataframes In Python

I have a very large dataframe (about 1.1M rows) and I am trying to sample it. I have a list of inde… Read more Quickly Sampling Large Number Of Rows From Large Dataframes In Python

Correct Way Of Writing Two Floats Into A Regular Txt

I am running a big job, in cluster mode. However, I am only interested in two floats numbers, which… Read more Correct Way Of Writing Two Floats Into A Regular Txt

Incremental Pca On Big Data

I just tried using the IncrementalPCA from sklearn.decomposition, but it threw a MemoryError just l… Read more Incremental Pca On Big Data

Numpy: 3-byte, 6-byte Types (aka Uint24, Uint48)

NumPy seems to lack built-in support for 3-byte and 6-byte types, aka uint24 and uint48. I have a l… Read more Numpy: 3-byte, 6-byte Types (aka Uint24, Uint48)

How To Incrementally Create An Sparse Matrix On Python?

I am creating a co-occurring matrix, which is of size 1M by 1M integer numbers. After the matrix i… Read more How To Incrementally Create An Sparse Matrix On Python?

Pandas: Df.groupby() Is Too Slow For Big Data Set. Any Alternatives Methods?

I have a pandas.DataFrame with 3.8 Million rows and one column, and I'm trying to group them by… Read more Pandas: Df.groupby() Is Too Slow For Big Data Set. Any Alternatives Methods?

Python Replace One Line In >20gb Text File

I am fully aware that there were many approaches to this problem. What I need is a simple Python sc… Read more Python Replace One Line In >20gb Text File