Python College

I have a problem with printing my output from muscle aligning in python. My code is: from Bio.Align… Read more Muscle Alignment In Python

i have a dataset (for compbio people out there, it's a FASTA) that is littered with newlines, t… Read more Pandas Read Csv Ignore Newline

I have several DNA sequences that have been aligned and I would like to keep only the bases that a… Read more Transform Dna Alignment Into Numpy Array Using Biopython

# File Name RandonProteinSequences.py # standard library import os import random # biopython from … Read more Importerror: No Module Named Writers.seqrecord.fasta

I am using python to create a program that converts a set of DNA sequences into amino acid (protein… Read more How To Convert A Set Of Dna Sequences Into Protein Sequences Using Python Programming?

I am trying to use Biopython (Entrez) with search terms that will return the accession number (and … Read more Using Search Terms With Biopython To Return Accession Numbers

I have a 15-mer nucleotide motif that uses degenerate nucleotide sequences. Example: ATNTTRTCNGGHGC… Read more Search For Motifs With Degenerate Positions

The heteroatoms from pdb file has to be removed. Here is the code but it did not work with my test … Read more Remove Heteroatoms From Pdb